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hdr plasmid  (Santa Cruz Biotechnology)


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    Structured Review

    Santa Cruz Biotechnology hdr plasmid
    Hdr Plasmid, supplied by Santa Cruz Biotechnology, used in various techniques. Bioz Stars score: 94/100, based on 3 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/hdr+plasmids/Heme+Oxygenase+1+HDR+Plasmid/pm41934679-54-19-12
    Average 94 stars, based on 3 article reviews
    hdr plasmid - by Bioz Stars, 2026-09
    94/100 stars

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    Related Articles

    Transfection:

    Article Title: Loss of PIK3CA allows in vitro growth but not in vivo progression of KRAS mutant lung adenocarcinoma in a syngeneic orthotopic implantation model
    Article Snippet: .. KP cells were similarly transfected with CRISPR/Cas9 knockout and HDR plasmids (Santa Cruz Biotechnology, sc-423192 and sc-423192-HDR) to delete the Stk11 gene. ..

    Article Title: Self-Amplifying NRF2-EZH2 Epigenetic Loop Converts KRAS Initiated Progenitors to Invasive Pancreatic Cancer
    Article Snippet: Acinar, ductal and EPCAM + cells were separated as described 28 , 49 , 50 after staining with biotinylated Dolichos Biflorus Agglutinin (DBA) (Vector Labs, B-1035), biotinylated Ulex Europaeus Agglutinin I (UEA I) (Vector Laboratories, B-1065), or biotin anti-CD326 (EpCAM) (eBioscience, #13-5791-80), followed by immunomagnetic biotin positive selection (EasySep, StemCell Technologies, # 18556) according to manufacturer’s instructions. .. Cell lines were transfected using Lipofectamine 3000 (Thermo Fisher Scientific, L3000015) with the following CRISPR/Cas9 KO and HDR plasmids according to manufacturer’s instructions: ENX-1 (EZH2) Crispr/Cas9 KO plasmid (m) (Santa Cruz Biotechnology, sc-420259), ENX-1 HDR plasmid (m) (Santa Cruz Biotechnology, sc-420259-HDR), NRF2 CRISPR/Cas9 KO Plasmid (m) (Santa Cruz Biotechnology, sc-421869), NRF2 HDR Plasmid (m) (Santa Cruz Biotechnology, sc-421869-HDR), EED CRISPR/Cas9 KO plasmid (m) (Santa Cruz, sc-420114), EED HDR plasmid (m) (Santa Cruz, sc-420114-HDR), ENX-1 CRISPR/Cas9 KO plasmid (h) (Santa Cruz, sc-417028-KO-2), ENX-1 HDR plasmid (h) (Santa Cruz, sc-417028-HDR-2), Control CRISPR/Cas9 plasmid (Santa Cruz Biotechnology, sc-418922), Mox1 Double Nickase Plasmids (Santa Cruz Biotechnology, sc-433531-NIC, sc-433531-NIC-2), and Control Double Nickase Plasmid (Santa Cruz Biotechnology, sc-437281). .. To obtain stable expression, cells were selected 96h after the transfection with puromycin (InvivoGen Cat# ant-pr-1).

    Article Title: A nuclease-driven mechanism of post-replicative ssDNA gap suppression
    Article Snippet: .. Stable MRNIP KO CRISPR clones were generated via transfection of HeLa cells with Santa Cruz Biotechnology CRISPR-Cas9 gRNA and HDR plasmids (sc-412131-KO-2 and sc-412131-HDR-2). ..

    Article Title: Cereblon (CRBN) inhibits prostate cancer metastasis by negatively regulating 6-phosphogluconate dehydrogenase (6PGD)
    Article Snippet: Total RNA was extracted using TRIzol (Ambion, 1596026, Austin, TX, USA) and purified with the Direct-zol RNA Miniprep Kit (Zymo Research, R2052, Irvine, CA, USA). cDNA was synthesized from 3 μg of RNA using TOPscript RT drymix (Enzynomics, RT200, Daejeon, Korea). qRT-PCR was performed using SYBR Green Master Mix (Enzynomics, RT500U), and gene expression was normalized to β-actin or RPLP0. .. CRBN knockout was performed in HEK293T, U87, H1299, and Caki-1 cells using a CRISPR/Cas9 system (Santa Cruz, sc-412142). sgCRBN/Cas9 and HDR plasmids were transfected with FuGENE, and puromycin selection was applied after 24 h. For siRNA, cells were transfected with 10 nM CRBN siRNA (GenePharma, Suzhou, China) using FuGENE, and protein knockdown was confirmed by immunoblotting after 48 h. .. shRNA plasmids against 6PGD in pGIPz and controls were purchased from Open Biosystems (Huntsville, AL, USA).

    Article Title: Loss of PIK3CA Allows In Vitro Growth but Not In Vivo Progression of KRAS Mutant Lung Adenocarcinoma in a Syngeneic Orthotopic Implantation Model.
    Article Snippet: .. Generation of KPS Cells KP cells were similarly transfected with CRISPR/Cas9 knockout and HDR plasmids (Santa Cruz Biotechnology sc-423192 and sc-423192-HDR) to delete the Stk11 gene. ..

    Article Title: Cereblon (CRBN) inhibits prostate cancer metastasis by negatively regulating 6-phosphogluconate dehydrogenase (6PGD).
    Article Snippet: Total RNA was extracted using TRIzol (Ambion, 1596026, Austin, TX, USA) and purified with the Direct-zol RNA Miniprep Kit (Zymo Research, R2052, Irvine, CA, USA). cDNA was synthesized from 3 μg of RNA using TOPscript RT drymix (Enzynomics, RT200, Daejeon, Korea). qRT-PCR was performed using SYBR Green Master Mix (Enzynomics, RT500U), and gene expression was normalized to β-actin or RPLP0. .. CRBN knockout and siRNA transfection CRBN knockout was performed in HEK293T, U87, H1299, and Caki-1 cells using a CRISPR/Cas9 system (Santa Cruz, sc-412142). sgCRBN/Cas9 and HDR plasmids were transfected with FuGENE, and puromycin selection was applied after 24 h. For siRNA, cells were transfected with 10 nM CRBN siRNA (GenePharma, Suzhou, China) using FuGENE, and protein knockdown was confirmed by immunoblotting after 48 h. .. shRNA plasmids against 6PGD in pGIPz and controls were purchased from Open Biosystems (Huntsville, AL, USA).

    Article Title: Loss of PIK3CA Allows In Vitro Growth but Not In Vivo Progression of KRAS Mutant Lung Adenocarcinoma in a Syngeneic Orthotopic Implantation Model
    Article Snippet: .. KP cells were similarly transfected with CRISPR/Cas9 knockout and HDR plasmids (Santa Cruz Biotechnology sc-423192 and sc-423192-HDR) to delete the Stk11 gene. ..

    CRISPR:

    Article Title: Loss of PIK3CA allows in vitro growth but not in vivo progression of KRAS mutant lung adenocarcinoma in a syngeneic orthotopic implantation model
    Article Snippet: .. KP cells were similarly transfected with CRISPR/Cas9 knockout and HDR plasmids (Santa Cruz Biotechnology, sc-423192 and sc-423192-HDR) to delete the Stk11 gene. ..

    Article Title: Self-Amplifying NRF2-EZH2 Epigenetic Loop Converts KRAS Initiated Progenitors to Invasive Pancreatic Cancer
    Article Snippet: Acinar, ductal and EPCAM + cells were separated as described 28 , 49 , 50 after staining with biotinylated Dolichos Biflorus Agglutinin (DBA) (Vector Labs, B-1035), biotinylated Ulex Europaeus Agglutinin I (UEA I) (Vector Laboratories, B-1065), or biotin anti-CD326 (EpCAM) (eBioscience, #13-5791-80), followed by immunomagnetic biotin positive selection (EasySep, StemCell Technologies, # 18556) according to manufacturer’s instructions. .. Cell lines were transfected using Lipofectamine 3000 (Thermo Fisher Scientific, L3000015) with the following CRISPR/Cas9 KO and HDR plasmids according to manufacturer’s instructions: ENX-1 (EZH2) Crispr/Cas9 KO plasmid (m) (Santa Cruz Biotechnology, sc-420259), ENX-1 HDR plasmid (m) (Santa Cruz Biotechnology, sc-420259-HDR), NRF2 CRISPR/Cas9 KO Plasmid (m) (Santa Cruz Biotechnology, sc-421869), NRF2 HDR Plasmid (m) (Santa Cruz Biotechnology, sc-421869-HDR), EED CRISPR/Cas9 KO plasmid (m) (Santa Cruz, sc-420114), EED HDR plasmid (m) (Santa Cruz, sc-420114-HDR), ENX-1 CRISPR/Cas9 KO plasmid (h) (Santa Cruz, sc-417028-KO-2), ENX-1 HDR plasmid (h) (Santa Cruz, sc-417028-HDR-2), Control CRISPR/Cas9 plasmid (Santa Cruz Biotechnology, sc-418922), Mox1 Double Nickase Plasmids (Santa Cruz Biotechnology, sc-433531-NIC, sc-433531-NIC-2), and Control Double Nickase Plasmid (Santa Cruz Biotechnology, sc-437281). .. To obtain stable expression, cells were selected 96h after the transfection with puromycin (InvivoGen Cat# ant-pr-1).

    Article Title: A nuclease-driven mechanism of post-replicative ssDNA gap suppression
    Article Snippet: .. Stable MRNIP KO CRISPR clones were generated via transfection of HeLa cells with Santa Cruz Biotechnology CRISPR-Cas9 gRNA and HDR plasmids (sc-412131-KO-2 and sc-412131-HDR-2). ..

    Article Title: Cereblon (CRBN) inhibits prostate cancer metastasis by negatively regulating 6-phosphogluconate dehydrogenase (6PGD)
    Article Snippet: Total RNA was extracted using TRIzol (Ambion, 1596026, Austin, TX, USA) and purified with the Direct-zol RNA Miniprep Kit (Zymo Research, R2052, Irvine, CA, USA). cDNA was synthesized from 3 μg of RNA using TOPscript RT drymix (Enzynomics, RT200, Daejeon, Korea). qRT-PCR was performed using SYBR Green Master Mix (Enzynomics, RT500U), and gene expression was normalized to β-actin or RPLP0. .. CRBN knockout was performed in HEK293T, U87, H1299, and Caki-1 cells using a CRISPR/Cas9 system (Santa Cruz, sc-412142). sgCRBN/Cas9 and HDR plasmids were transfected with FuGENE, and puromycin selection was applied after 24 h. For siRNA, cells were transfected with 10 nM CRBN siRNA (GenePharma, Suzhou, China) using FuGENE, and protein knockdown was confirmed by immunoblotting after 48 h. .. shRNA plasmids against 6PGD in pGIPz and controls were purchased from Open Biosystems (Huntsville, AL, USA).

    Article Title: Loss of PIK3CA Allows In Vitro Growth but Not In Vivo Progression of KRAS Mutant Lung Adenocarcinoma in a Syngeneic Orthotopic Implantation Model.
    Article Snippet: .. Generation of KPS Cells KP cells were similarly transfected with CRISPR/Cas9 knockout and HDR plasmids (Santa Cruz Biotechnology sc-423192 and sc-423192-HDR) to delete the Stk11 gene. ..

    Article Title: Cereblon (CRBN) inhibits prostate cancer metastasis by negatively regulating 6-phosphogluconate dehydrogenase (6PGD).
    Article Snippet: Total RNA was extracted using TRIzol (Ambion, 1596026, Austin, TX, USA) and purified with the Direct-zol RNA Miniprep Kit (Zymo Research, R2052, Irvine, CA, USA). cDNA was synthesized from 3 μg of RNA using TOPscript RT drymix (Enzynomics, RT200, Daejeon, Korea). qRT-PCR was performed using SYBR Green Master Mix (Enzynomics, RT500U), and gene expression was normalized to β-actin or RPLP0. .. CRBN knockout and siRNA transfection CRBN knockout was performed in HEK293T, U87, H1299, and Caki-1 cells using a CRISPR/Cas9 system (Santa Cruz, sc-412142). sgCRBN/Cas9 and HDR plasmids were transfected with FuGENE, and puromycin selection was applied after 24 h. For siRNA, cells were transfected with 10 nM CRBN siRNA (GenePharma, Suzhou, China) using FuGENE, and protein knockdown was confirmed by immunoblotting after 48 h. .. shRNA plasmids against 6PGD in pGIPz and controls were purchased from Open Biosystems (Huntsville, AL, USA).

    Article Title: Loss of PIK3CA Allows In Vitro Growth but Not In Vivo Progression of KRAS Mutant Lung Adenocarcinoma in a Syngeneic Orthotopic Implantation Model
    Article Snippet: .. KP cells were similarly transfected with CRISPR/Cas9 knockout and HDR plasmids (Santa Cruz Biotechnology sc-423192 and sc-423192-HDR) to delete the Stk11 gene. ..

    Article Title: Propionyl-CoA carboxylase subunit B regulates anti-tumor T cells in a pancreatic cancer mouse model
    Article Snippet: .. Pik3ca −/− (αKO) KPC cell lines were generated by transfecting WT KPC cells with Pik3ca CRISPR/Cas9 αKO and HDR plasmids (Santa Cruz Biotechnology, sc-422231 and sc-422231-HDR). .. Transfected cells were selected with 5 mg/ml puromycin and sorted based on red fluorescent protein (RFP) by fluorescence-activated cell sorting on a FACSAria (BD Biosciences).

    Knock-Out:

    Article Title: Loss of PIK3CA allows in vitro growth but not in vivo progression of KRAS mutant lung adenocarcinoma in a syngeneic orthotopic implantation model
    Article Snippet: .. KP cells were similarly transfected with CRISPR/Cas9 knockout and HDR plasmids (Santa Cruz Biotechnology, sc-423192 and sc-423192-HDR) to delete the Stk11 gene. ..

    Article Title: Cereblon (CRBN) inhibits prostate cancer metastasis by negatively regulating 6-phosphogluconate dehydrogenase (6PGD)
    Article Snippet: Total RNA was extracted using TRIzol (Ambion, 1596026, Austin, TX, USA) and purified with the Direct-zol RNA Miniprep Kit (Zymo Research, R2052, Irvine, CA, USA). cDNA was synthesized from 3 μg of RNA using TOPscript RT drymix (Enzynomics, RT200, Daejeon, Korea). qRT-PCR was performed using SYBR Green Master Mix (Enzynomics, RT500U), and gene expression was normalized to β-actin or RPLP0. .. CRBN knockout was performed in HEK293T, U87, H1299, and Caki-1 cells using a CRISPR/Cas9 system (Santa Cruz, sc-412142). sgCRBN/Cas9 and HDR plasmids were transfected with FuGENE, and puromycin selection was applied after 24 h. For siRNA, cells were transfected with 10 nM CRBN siRNA (GenePharma, Suzhou, China) using FuGENE, and protein knockdown was confirmed by immunoblotting after 48 h. .. shRNA plasmids against 6PGD in pGIPz and controls were purchased from Open Biosystems (Huntsville, AL, USA).

    Article Title: Loss of PIK3CA Allows In Vitro Growth but Not In Vivo Progression of KRAS Mutant Lung Adenocarcinoma in a Syngeneic Orthotopic Implantation Model.
    Article Snippet: .. Generation of KPS Cells KP cells were similarly transfected with CRISPR/Cas9 knockout and HDR plasmids (Santa Cruz Biotechnology sc-423192 and sc-423192-HDR) to delete the Stk11 gene. ..

    Article Title: Cereblon (CRBN) inhibits prostate cancer metastasis by negatively regulating 6-phosphogluconate dehydrogenase (6PGD).
    Article Snippet: Total RNA was extracted using TRIzol (Ambion, 1596026, Austin, TX, USA) and purified with the Direct-zol RNA Miniprep Kit (Zymo Research, R2052, Irvine, CA, USA). cDNA was synthesized from 3 μg of RNA using TOPscript RT drymix (Enzynomics, RT200, Daejeon, Korea). qRT-PCR was performed using SYBR Green Master Mix (Enzynomics, RT500U), and gene expression was normalized to β-actin or RPLP0. .. CRBN knockout and siRNA transfection CRBN knockout was performed in HEK293T, U87, H1299, and Caki-1 cells using a CRISPR/Cas9 system (Santa Cruz, sc-412142). sgCRBN/Cas9 and HDR plasmids were transfected with FuGENE, and puromycin selection was applied after 24 h. For siRNA, cells were transfected with 10 nM CRBN siRNA (GenePharma, Suzhou, China) using FuGENE, and protein knockdown was confirmed by immunoblotting after 48 h. .. shRNA plasmids against 6PGD in pGIPz and controls were purchased from Open Biosystems (Huntsville, AL, USA).

    Article Title: Loss of PIK3CA Allows In Vitro Growth but Not In Vivo Progression of KRAS Mutant Lung Adenocarcinoma in a Syngeneic Orthotopic Implantation Model
    Article Snippet: .. KP cells were similarly transfected with CRISPR/Cas9 knockout and HDR plasmids (Santa Cruz Biotechnology sc-423192 and sc-423192-HDR) to delete the Stk11 gene. ..

    Plasmid Preparation:

    Article Title: Self-Amplifying NRF2-EZH2 Epigenetic Loop Converts KRAS Initiated Progenitors to Invasive Pancreatic Cancer
    Article Snippet: Acinar, ductal and EPCAM + cells were separated as described 28 , 49 , 50 after staining with biotinylated Dolichos Biflorus Agglutinin (DBA) (Vector Labs, B-1035), biotinylated Ulex Europaeus Agglutinin I (UEA I) (Vector Laboratories, B-1065), or biotin anti-CD326 (EpCAM) (eBioscience, #13-5791-80), followed by immunomagnetic biotin positive selection (EasySep, StemCell Technologies, # 18556) according to manufacturer’s instructions. .. Cell lines were transfected using Lipofectamine 3000 (Thermo Fisher Scientific, L3000015) with the following CRISPR/Cas9 KO and HDR plasmids according to manufacturer’s instructions: ENX-1 (EZH2) Crispr/Cas9 KO plasmid (m) (Santa Cruz Biotechnology, sc-420259), ENX-1 HDR plasmid (m) (Santa Cruz Biotechnology, sc-420259-HDR), NRF2 CRISPR/Cas9 KO Plasmid (m) (Santa Cruz Biotechnology, sc-421869), NRF2 HDR Plasmid (m) (Santa Cruz Biotechnology, sc-421869-HDR), EED CRISPR/Cas9 KO plasmid (m) (Santa Cruz, sc-420114), EED HDR plasmid (m) (Santa Cruz, sc-420114-HDR), ENX-1 CRISPR/Cas9 KO plasmid (h) (Santa Cruz, sc-417028-KO-2), ENX-1 HDR plasmid (h) (Santa Cruz, sc-417028-HDR-2), Control CRISPR/Cas9 plasmid (Santa Cruz Biotechnology, sc-418922), Mox1 Double Nickase Plasmids (Santa Cruz Biotechnology, sc-433531-NIC, sc-433531-NIC-2), and Control Double Nickase Plasmid (Santa Cruz Biotechnology, sc-437281). .. To obtain stable expression, cells were selected 96h after the transfection with puromycin (InvivoGen Cat# ant-pr-1).

    Control:

    Article Title: Self-Amplifying NRF2-EZH2 Epigenetic Loop Converts KRAS Initiated Progenitors to Invasive Pancreatic Cancer
    Article Snippet: Acinar, ductal and EPCAM + cells were separated as described 28 , 49 , 50 after staining with biotinylated Dolichos Biflorus Agglutinin (DBA) (Vector Labs, B-1035), biotinylated Ulex Europaeus Agglutinin I (UEA I) (Vector Laboratories, B-1065), or biotin anti-CD326 (EpCAM) (eBioscience, #13-5791-80), followed by immunomagnetic biotin positive selection (EasySep, StemCell Technologies, # 18556) according to manufacturer’s instructions. .. Cell lines were transfected using Lipofectamine 3000 (Thermo Fisher Scientific, L3000015) with the following CRISPR/Cas9 KO and HDR plasmids according to manufacturer’s instructions: ENX-1 (EZH2) Crispr/Cas9 KO plasmid (m) (Santa Cruz Biotechnology, sc-420259), ENX-1 HDR plasmid (m) (Santa Cruz Biotechnology, sc-420259-HDR), NRF2 CRISPR/Cas9 KO Plasmid (m) (Santa Cruz Biotechnology, sc-421869), NRF2 HDR Plasmid (m) (Santa Cruz Biotechnology, sc-421869-HDR), EED CRISPR/Cas9 KO plasmid (m) (Santa Cruz, sc-420114), EED HDR plasmid (m) (Santa Cruz, sc-420114-HDR), ENX-1 CRISPR/Cas9 KO plasmid (h) (Santa Cruz, sc-417028-KO-2), ENX-1 HDR plasmid (h) (Santa Cruz, sc-417028-HDR-2), Control CRISPR/Cas9 plasmid (Santa Cruz Biotechnology, sc-418922), Mox1 Double Nickase Plasmids (Santa Cruz Biotechnology, sc-433531-NIC, sc-433531-NIC-2), and Control Double Nickase Plasmid (Santa Cruz Biotechnology, sc-437281). .. To obtain stable expression, cells were selected 96h after the transfection with puromycin (InvivoGen Cat# ant-pr-1).

    Clone Assay:

    Article Title: A nuclease-driven mechanism of post-replicative ssDNA gap suppression
    Article Snippet: .. Stable MRNIP KO CRISPR clones were generated via transfection of HeLa cells with Santa Cruz Biotechnology CRISPR-Cas9 gRNA and HDR plasmids (sc-412131-KO-2 and sc-412131-HDR-2). ..

    Generated:

    Article Title: A nuclease-driven mechanism of post-replicative ssDNA gap suppression
    Article Snippet: .. Stable MRNIP KO CRISPR clones were generated via transfection of HeLa cells with Santa Cruz Biotechnology CRISPR-Cas9 gRNA and HDR plasmids (sc-412131-KO-2 and sc-412131-HDR-2). ..

    Article Title: Propionyl-CoA carboxylase subunit B regulates anti-tumor T cells in a pancreatic cancer mouse model
    Article Snippet: .. Pik3ca −/− (αKO) KPC cell lines were generated by transfecting WT KPC cells with Pik3ca CRISPR/Cas9 αKO and HDR plasmids (Santa Cruz Biotechnology, sc-422231 and sc-422231-HDR). .. Transfected cells were selected with 5 mg/ml puromycin and sorted based on red fluorescent protein (RFP) by fluorescence-activated cell sorting on a FACSAria (BD Biosciences).

    Selection:

    Article Title: Cereblon (CRBN) inhibits prostate cancer metastasis by negatively regulating 6-phosphogluconate dehydrogenase (6PGD)
    Article Snippet: Total RNA was extracted using TRIzol (Ambion, 1596026, Austin, TX, USA) and purified with the Direct-zol RNA Miniprep Kit (Zymo Research, R2052, Irvine, CA, USA). cDNA was synthesized from 3 μg of RNA using TOPscript RT drymix (Enzynomics, RT200, Daejeon, Korea). qRT-PCR was performed using SYBR Green Master Mix (Enzynomics, RT500U), and gene expression was normalized to β-actin or RPLP0. .. CRBN knockout was performed in HEK293T, U87, H1299, and Caki-1 cells using a CRISPR/Cas9 system (Santa Cruz, sc-412142). sgCRBN/Cas9 and HDR plasmids were transfected with FuGENE, and puromycin selection was applied after 24 h. For siRNA, cells were transfected with 10 nM CRBN siRNA (GenePharma, Suzhou, China) using FuGENE, and protein knockdown was confirmed by immunoblotting after 48 h. .. shRNA plasmids against 6PGD in pGIPz and controls were purchased from Open Biosystems (Huntsville, AL, USA).

    Article Title: Cereblon (CRBN) inhibits prostate cancer metastasis by negatively regulating 6-phosphogluconate dehydrogenase (6PGD).
    Article Snippet: Total RNA was extracted using TRIzol (Ambion, 1596026, Austin, TX, USA) and purified with the Direct-zol RNA Miniprep Kit (Zymo Research, R2052, Irvine, CA, USA). cDNA was synthesized from 3 μg of RNA using TOPscript RT drymix (Enzynomics, RT200, Daejeon, Korea). qRT-PCR was performed using SYBR Green Master Mix (Enzynomics, RT500U), and gene expression was normalized to β-actin or RPLP0. .. CRBN knockout and siRNA transfection CRBN knockout was performed in HEK293T, U87, H1299, and Caki-1 cells using a CRISPR/Cas9 system (Santa Cruz, sc-412142). sgCRBN/Cas9 and HDR plasmids were transfected with FuGENE, and puromycin selection was applied after 24 h. For siRNA, cells were transfected with 10 nM CRBN siRNA (GenePharma, Suzhou, China) using FuGENE, and protein knockdown was confirmed by immunoblotting after 48 h. .. shRNA plasmids against 6PGD in pGIPz and controls were purchased from Open Biosystems (Huntsville, AL, USA).

    Knockdown:

    Article Title: Cereblon (CRBN) inhibits prostate cancer metastasis by negatively regulating 6-phosphogluconate dehydrogenase (6PGD)
    Article Snippet: Total RNA was extracted using TRIzol (Ambion, 1596026, Austin, TX, USA) and purified with the Direct-zol RNA Miniprep Kit (Zymo Research, R2052, Irvine, CA, USA). cDNA was synthesized from 3 μg of RNA using TOPscript RT drymix (Enzynomics, RT200, Daejeon, Korea). qRT-PCR was performed using SYBR Green Master Mix (Enzynomics, RT500U), and gene expression was normalized to β-actin or RPLP0. .. CRBN knockout was performed in HEK293T, U87, H1299, and Caki-1 cells using a CRISPR/Cas9 system (Santa Cruz, sc-412142). sgCRBN/Cas9 and HDR plasmids were transfected with FuGENE, and puromycin selection was applied after 24 h. For siRNA, cells were transfected with 10 nM CRBN siRNA (GenePharma, Suzhou, China) using FuGENE, and protein knockdown was confirmed by immunoblotting after 48 h. .. shRNA plasmids against 6PGD in pGIPz and controls were purchased from Open Biosystems (Huntsville, AL, USA).

    Article Title: Cereblon (CRBN) inhibits prostate cancer metastasis by negatively regulating 6-phosphogluconate dehydrogenase (6PGD).
    Article Snippet: Total RNA was extracted using TRIzol (Ambion, 1596026, Austin, TX, USA) and purified with the Direct-zol RNA Miniprep Kit (Zymo Research, R2052, Irvine, CA, USA). cDNA was synthesized from 3 μg of RNA using TOPscript RT drymix (Enzynomics, RT200, Daejeon, Korea). qRT-PCR was performed using SYBR Green Master Mix (Enzynomics, RT500U), and gene expression was normalized to β-actin or RPLP0. .. CRBN knockout and siRNA transfection CRBN knockout was performed in HEK293T, U87, H1299, and Caki-1 cells using a CRISPR/Cas9 system (Santa Cruz, sc-412142). sgCRBN/Cas9 and HDR plasmids were transfected with FuGENE, and puromycin selection was applied after 24 h. For siRNA, cells were transfected with 10 nM CRBN siRNA (GenePharma, Suzhou, China) using FuGENE, and protein knockdown was confirmed by immunoblotting after 48 h. .. shRNA plasmids against 6PGD in pGIPz and controls were purchased from Open Biosystems (Huntsville, AL, USA).

    Western Blot:

    Article Title: Cereblon (CRBN) inhibits prostate cancer metastasis by negatively regulating 6-phosphogluconate dehydrogenase (6PGD)
    Article Snippet: Total RNA was extracted using TRIzol (Ambion, 1596026, Austin, TX, USA) and purified with the Direct-zol RNA Miniprep Kit (Zymo Research, R2052, Irvine, CA, USA). cDNA was synthesized from 3 μg of RNA using TOPscript RT drymix (Enzynomics, RT200, Daejeon, Korea). qRT-PCR was performed using SYBR Green Master Mix (Enzynomics, RT500U), and gene expression was normalized to β-actin or RPLP0. .. CRBN knockout was performed in HEK293T, U87, H1299, and Caki-1 cells using a CRISPR/Cas9 system (Santa Cruz, sc-412142). sgCRBN/Cas9 and HDR plasmids were transfected with FuGENE, and puromycin selection was applied after 24 h. For siRNA, cells were transfected with 10 nM CRBN siRNA (GenePharma, Suzhou, China) using FuGENE, and protein knockdown was confirmed by immunoblotting after 48 h. .. shRNA plasmids against 6PGD in pGIPz and controls were purchased from Open Biosystems (Huntsville, AL, USA).

    Article Title: Cereblon (CRBN) inhibits prostate cancer metastasis by negatively regulating 6-phosphogluconate dehydrogenase (6PGD).
    Article Snippet: Total RNA was extracted using TRIzol (Ambion, 1596026, Austin, TX, USA) and purified with the Direct-zol RNA Miniprep Kit (Zymo Research, R2052, Irvine, CA, USA). cDNA was synthesized from 3 μg of RNA using TOPscript RT drymix (Enzynomics, RT200, Daejeon, Korea). qRT-PCR was performed using SYBR Green Master Mix (Enzynomics, RT500U), and gene expression was normalized to β-actin or RPLP0. .. CRBN knockout and siRNA transfection CRBN knockout was performed in HEK293T, U87, H1299, and Caki-1 cells using a CRISPR/Cas9 system (Santa Cruz, sc-412142). sgCRBN/Cas9 and HDR plasmids were transfected with FuGENE, and puromycin selection was applied after 24 h. For siRNA, cells were transfected with 10 nM CRBN siRNA (GenePharma, Suzhou, China) using FuGENE, and protein knockdown was confirmed by immunoblotting after 48 h. .. shRNA plasmids against 6PGD in pGIPz and controls were purchased from Open Biosystems (Huntsville, AL, USA).



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    Santa Cruz Biotechnology upar plasmid hdr
    Flow cytometry analysis of vasculogenic-related markers on ChS cell surfaces. The expression levels of vasculogenic markers on SW1353, patient-derived ChS-1, ChS-2, ChS-3, stabilized Sarc ChS cells and HUVECs (with the last cell type used for comparison) were determined by flow cytometry using anti-CD34_PE-Cy7 (sky blue), anti-Podoplanin_ABflo 488 (red), anti-CD31_ABflo 647 (blue), anti-VE Cadherin_ABflo 488 (magenta), anti-EphA2-Alexa 488 (yellow) and <t>anti-uPAR_APC</t> (green). Unstained cells or omission of the primary antibody (when using unconjugated anti-EphA2) were used as negative controls (black lines).
    Upar Plasmid Hdr, supplied by Santa Cruz Biotechnology, used in various techniques. Bioz Stars score: 94/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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    upar plasmid hdr - by Bioz Stars, 2026-09
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    Flow cytometry analysis of vasculogenic-related markers on ChS cell surfaces. The expression levels of vasculogenic markers on SW1353, patient-derived ChS-1, ChS-2, ChS-3, stabilized Sarc ChS cells and HUVECs (with the last cell type used for comparison) were determined by flow cytometry using anti-CD34_PE-Cy7 (sky blue), anti-Podoplanin_ABflo 488 (red), anti-CD31_ABflo 647 (blue), anti-VE Cadherin_ABflo 488 (magenta), anti-EphA2-Alexa 488 (yellow) and anti-uPAR_APC (green). Unstained cells or omission of the primary antibody (when using unconjugated anti-EphA2) were used as negative controls (black lines).

    Journal: Cells

    Article Title: Vasculogenic Mimicry: A Potential Therapeutic Target for Chondrosarcoma Therapy

    doi: 10.3390/cells15050392

    Figure Lengend Snippet: Flow cytometry analysis of vasculogenic-related markers on ChS cell surfaces. The expression levels of vasculogenic markers on SW1353, patient-derived ChS-1, ChS-2, ChS-3, stabilized Sarc ChS cells and HUVECs (with the last cell type used for comparison) were determined by flow cytometry using anti-CD34_PE-Cy7 (sky blue), anti-Podoplanin_ABflo 488 (red), anti-CD31_ABflo 647 (blue), anti-VE Cadherin_ABflo 488 (magenta), anti-EphA2-Alexa 488 (yellow) and anti-uPAR_APC (green). Unstained cells or omission of the primary antibody (when using unconjugated anti-EphA2) were used as negative controls (black lines).

    Article Snippet: The CRISPR/Cas9 plasmid (sc-400666), targeting PLAUR exon 3, and the uPAR Plasmid HDR (sc-400666-HDR), providing a specific DNA repair template for a double-strand break, were obtained from Santa Cruz Biotechnology.

    Techniques: Flow Cytometry, Expressing, Derivative Assay, Comparison

    The cell surface and mRNA levels of uPAR increase when Sarc cells form VM. ( A ) Comparison of uPAR (CD87) levels on cell surface of Sarc cells cultured in 2D conditions (green) to Sarc cells forming VM recovered from Matrigel (blue) analyzed by flow cytometry; unstained cells were used as negative controls (black). Table reports the geometric mean values calculated for each sample and expressed as fold change over the corresponding unstained negative control. ( B ) Real-time PCR analysis of PLAUR mRNA level in Sarc cells cultured in 2D conditions or Sarc cells forming VM recovered from Matrigel. Student’s t -test *** p < 0.001.

    Journal: Cells

    Article Title: Vasculogenic Mimicry: A Potential Therapeutic Target for Chondrosarcoma Therapy

    doi: 10.3390/cells15050392

    Figure Lengend Snippet: The cell surface and mRNA levels of uPAR increase when Sarc cells form VM. ( A ) Comparison of uPAR (CD87) levels on cell surface of Sarc cells cultured in 2D conditions (green) to Sarc cells forming VM recovered from Matrigel (blue) analyzed by flow cytometry; unstained cells were used as negative controls (black). Table reports the geometric mean values calculated for each sample and expressed as fold change over the corresponding unstained negative control. ( B ) Real-time PCR analysis of PLAUR mRNA level in Sarc cells cultured in 2D conditions or Sarc cells forming VM recovered from Matrigel. Student’s t -test *** p < 0.001.

    Article Snippet: The CRISPR/Cas9 plasmid (sc-400666), targeting PLAUR exon 3, and the uPAR Plasmid HDR (sc-400666-HDR), providing a specific DNA repair template for a double-strand break, were obtained from Santa Cruz Biotechnology.

    Techniques: Comparison, Cell Culture, Flow Cytometry, Negative Control, Real-time Polymerase Chain Reaction

    The involvement of uPAR in the VM ability of Sarc cells. ( A ) uPAR KO Sarc cells, generated by the CRISPR-Cas9 technique, were sorted as GFP-positive, uPAR-negative by FACS Melody ( B , D ); the uPAR knockout was confirmed by flow cytometry ( A ), real-time PCR ( B ) (Student’s t -test *** p < 0.001), and WB ( C ). ( D ) Representative images of VM ability by WT or uPAR KO Sarc cells suspended in 4% FBS medium and seeded onto GFR-Matrigel. Scale bar, 500 μm. ( E ) Quantitative analysis of VM performed by the Angiogenesis Analyzer tool of ImageJ software. Data represent the mean ± SD from quadruplicate experiments performed three times. Student’s t -test *** p < 0.001.

    Journal: Cells

    Article Title: Vasculogenic Mimicry: A Potential Therapeutic Target for Chondrosarcoma Therapy

    doi: 10.3390/cells15050392

    Figure Lengend Snippet: The involvement of uPAR in the VM ability of Sarc cells. ( A ) uPAR KO Sarc cells, generated by the CRISPR-Cas9 technique, were sorted as GFP-positive, uPAR-negative by FACS Melody ( B , D ); the uPAR knockout was confirmed by flow cytometry ( A ), real-time PCR ( B ) (Student’s t -test *** p < 0.001), and WB ( C ). ( D ) Representative images of VM ability by WT or uPAR KO Sarc cells suspended in 4% FBS medium and seeded onto GFR-Matrigel. Scale bar, 500 μm. ( E ) Quantitative analysis of VM performed by the Angiogenesis Analyzer tool of ImageJ software. Data represent the mean ± SD from quadruplicate experiments performed three times. Student’s t -test *** p < 0.001.

    Article Snippet: The CRISPR/Cas9 plasmid (sc-400666), targeting PLAUR exon 3, and the uPAR Plasmid HDR (sc-400666-HDR), providing a specific DNA repair template for a double-strand break, were obtained from Santa Cruz Biotechnology.

    Techniques: Generated, CRISPR, Knock-Out, Flow Cytometry, Real-time Polymerase Chain Reaction, Software